• Lectures and Courses in Bioinformatics (Max Planck Institute)

• Survey of Bioinformatics Programs (July 2003)

• Bioinformatics FAQ

Journals

• Bioinformatics Advance Access

• Bioinformatics Links Directory
• NCBI Handbook
• TBR:  The Bioinformatics Resource
• World of Bioinformatics Links
• Bioinformatics Software, Univ. of Minnesota Supercomputing Institute

Sequence Identifiers / Accession Numbers

• Sequence Identifiers: A Historical Note
• Accession Numbers
• Searching for Unique Identifiers
• RefSeq Definitions
• GI (GenInfo Identifier) number
• Sequence Revision History
• Related:  NCBI Genomic Sequence Assembly and Annotation Process

• The NCBI Taxonomy Homepage

• Biocomputing Tutorials

• Algorithms for Molecular Biology: Course Archive
• Computational Biology Lecture Notes (Robert Murphy, Carnegie Mellon)

• Computational Molecular Biology at NIH

• Bioinformatics.Net
• bioperl.org

• An Introduction To Sequence Alignment Algorithms
• Information about Sequence Analysis
• Sequence Analysis Tools

• NCBI BLAST
• BLAST Program Selection Guide

R (statistical package)

• The R Project
• Using R for Data Analysis and Graphics
• R help archive
• R mailing lists archive (searchable)
• R for SAS and SPSS Users

• Software for Molecular Biology
• The NCBI C++ Toolkit

• Sequence Analysis Tools
• SEALS (System for Easy Analysis of Lots of Sequences)

• Genome Databases

• A Database of Segmentation Gene Expression in Drosophila

• Gene Ontology Consortium
• Gene Ontology Database Downloads
• Gene Ontology Database Schema
• Gene Ontology Sample Queries

• Ensembl Genome Browser

• Accession Number:  NM_137709
  http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NM_137709
• Affymetrix Probset ID:  MOE430A GeneChip, 1420643_at   http://www.affymetrix.com/LinkServlet?array=MOE430A&probeset=1420643_at
• Flybase:  FBgn0038099
  http://flybase.bio.indiana.edu/.bin/fbidq.html?FBgn0038099
• GI Number: 12345
  http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=12345
• LocusLink:  35817
  http://www.ncbi.nlm.nih.gov/LocusLink/LocRpt.cgi?l=35817

Related:

• Affy's Examples of Deep Links

• The Molecular Biology Database Collection: 2004 update
• The Molecular Biology Database Collection: 2003 update

• Biomolecule Naming Service (BNS)
• LocusLink and LocusLink FTP Site
• SOURCE
• TIGR Gene Indices
• Unigene

Flow Cytometry Data / Analysis / Software

• Flow Cytometry Data Analysis
• Flow Cytometry Glossary
• Data File Standard for Flow Cytometry, Version FCS3.0
• The Evolution of Flow Cytometry Standard, FCS3.0, into a DICOM Compatible Format
• Flow Cytometry Slides