2007/10/23 11:48:18 ***** parms ***** TWO 2007/10/23 11:48:16 ***** uname ***** Linux i686 ***** $HOME=/home/efg $HOSTNAME=node0011 $REMOTEHOST= $JOB= $SGE_TASK_ID=undefined $SHELL=/bin/bash $USER=efg $JOB_ID=84245 ***** $PATH ***** /home/efg/Linux-i686/bin /home/efg/bin /n/site/inst/Linux-i686/bioinfo/bin /n/site/inst/Linux-i686/sys/bin /n/site/inst/shared/bioinfo/bin /n/site/inst/shared/sys/bin /usr/local/bin /opt/sge/bin/lx24-x86 /tmp/84245.1.all.q /usr/local/bin /bin /usr/bin /usr/X11R6/bin /n/site/inst/Linux-i686/bioinfo/ncbi/toolbox/current/bin /n/site/inst/Linux-i686/bioinfo/vmatch/current . ***** df ***** Filesystem 1K-blocks Used Available Use% Mounted on VNFS(default) 517708 197136 320572 39% / none 517800 0 517800 0% /dev/shm cluster02-sharedfs:/vnfs 105906848 39745352 60781736 40% /vnfs cluster02:/opt 105906848 39745344 60781760 40% /opt cluster02:/lib/modules 105906848 39745344 60781760 40% /lib/modules lrepkc01:/rep/l-clone/home 34616471552 30427563016 4188908536 88% /home lrepkc01:/rep/l-clone/site 34616471552 30427563016 4188908536 88% /n/site lrepkc01:/rep/l-clone/sgi 34616471552 30427563016 4188908536 88% /n/sgi lrepkc01:/rep/l-clone/data1 34616471552 30427563016 4188908536 88% /n/data1 lrepkc01:/rep/l-clone/solexa 34616471552 30427563016 4188908536 88% /n/solexa /dev/md0 30199996 45224 28620704 1% /scratch ***** SGE ***** SGE_TASK_STEPSIZE=undefined SGE_O_WORKDIR=/home/efg/cluster/getinfo SGE_O_HOME=/home/efg SGE_ARCH=lx24-x86 SGE_CELL=default SGE_TASK_LAST=undefined SGE_TASK_ID=undefined SGE_BINARY_PATH=/opt/sge/bin/lx24-x86 SGE_STDERR_PATH=/home/efg/cluster/getinfo/stdout2.txt SGE_STDOUT_PATH=/home/efg/cluster/getinfo/stdout2.txt SGE_ACCOUNT=sge SGE_ROOT=/opt/sge SGE_JOB_SPOOL_DIR=/tmp/sge/spool/node0011/active_jobs/84245.1 SGE_CWD_PATH=/home/efg/cluster/getinfo SGE_O_LOGNAME=efg SGE_O_MAIL=/var/spool/mail/efg SGE_TASK_FIRST=undefined SGE_O_PATH=/home/efg/Linux-i686/bin:/home/efg/bin:/n/site/inst/Linux-i686/bioinfo/staden/current/linux-bin:/n/site/inst/Linux-i686/bioinfo/seals/bin:/n/site/inst/Linux-i686/sys/jdk/bin:/n/site/inst/Linux-i686/bioinfo/bin:/n/site/inst/Linux-i686/sys/bin:/n/site/inst/shared/bioinfo/bin:/n/site/inst/shared/sys/bin:/usr/local/bin:/opt/sge/bin/lx24-x86:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/n/site/inst/shared/bioinfo/artemis:/n/site/inst/Linux-i686/bioinfo/consed/current/bin:/n/site/inst/Linux-i686/bioinfo/consensus/bin:/n/site/inst/Linux-i686/bioinfo/euler/bin:/n/site/inst/shared/bioinfo/genotrace:/n/site/inst/Linux-i686/bioinfo/mfold/bin:/n/site/inst/Linux-i686/bioinfo/modeller6v2/bin:/n/site/inst/Linux-i686/bioinfo/ncbi/toolbox/current/bin:/n/site/inst/Linux-i686/bioinfo/phylip/bin:/n/site/inst/Linux-i686/bioinfo/t-coffee/current/bin:/n/site/inst/Linux-i686/bioinfo/vmatch/current:/n/site/inst/Linux-i686/bioinfo/wublast/current:. SGE_O_HOST=cluster02 SGE_O_SHELL=/usr/local/bin/bash SGE_STDIN_PATH=/dev/null ***** other env ***** ENV_SET=true MANPATH=/n/site/inst/Linux-i686/bioinfo/man:/n/site/inst/Linux-i686/bioinfo/share/man:/n/site/inst/Linux-i686/sys/man:/n/site/inst/Linux-i686/sys/share/man:/n/site/inst/shared/bioinfo/man:/n/site/inst/shared/bioinfo/share/man:/n/site/inst/shared/sys/man:/n/site/inst/shared/sys/share/man:/opt/sge/man:/usr/local/man:/usr/share/man:/usr/man:/usr/X11R6/man:/usr/X11R6/man NCBI=/n/site/inst/Linux-i686/bioinfo/ncbi/toolbox/current/config/unix HOSTNAME=node0011 SHELL=/bin/bash TERM=linux HISTSIZE=1000 NHOSTS=1 TMPDIR=/tmp/84245.1.all.q MKVTREEMAPDIR=/home/efg/vstree:/n/site/inst/Linux-i686/bioinfo/vmatch/current/TRANS LIBRARY_PATH=/n/site/inst/Linux-i686/sys/lib BLASTDIR=/n/site/inst/Linux-i686/bioinfo/ncbi/toolbox/ncbi-current/build RESTARTED=0 ARC=lx24-x86 http_proxy=http://proxykc04.stowers-institute.org:8080/ HISTFILESIZE=500 USER=efg LD_LIBRARY_PATH=/opt/sge/lib/lx24-x86:/n/site/inst/Linux-i686/sys/lib:/n/site/inst/Linux-i686/bioinfo/lib LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tz=01;31:*.rpm=01;31:*.cpio=01;31:*.jpg=01;35:*.gif=01;35:*.bmp=01;35:*.xbm=01;35:*.xpm=01;35:*.png=01;35:*.tif=01;35: QUEUE=all.q CPATH=/n/site/inst/Linux-i686/sys/include TMOUT=0 PAGER=less OBDA_SEARCH_PATH=/n/site/inst/shared/bioinfo/etc BLASTDATADIR=/n/data1/blast/db TCOFFEEDIR=/n/site/inst/Linux-i686/bioinfo/t-coffee/current/bin MAIL=/var/spool/mail/efg PATH=/home/efg/Linux-i686/bin:/home/efg/bin:/n/site/inst/Linux-i686/bioinfo/bin:/n/site/inst/Linux-i686/sys/bin:/n/site/inst/shared/bioinfo/bin:/n/site/inst/shared/sys/bin:/usr/local/bin:/opt/sge/bin/lx24-x86:/tmp/84245.1.all.q:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/n/site/inst/Linux-i686/bioinfo/ncbi/toolbox/current/bin:/n/site/inst/Linux-i686/bioinfo/vmatch/current:. CLUSTALDIR=/n/site/inst/Linux-i686/bioinfo/bin INPUTRC=/etc/inputrc PWD=/home/efg/cluster/getinfo EDITOR=vi JOB_SCRIPT=/tmp/sge/spool/node0011/job_scripts/84245 JOB_NAME=Info2 PS1=\n[\! \u \h $(date '+%d%b%y %T') $( pwd )]\n BLASTDB=/n/data1/blast/db SIMRARCH=Linux-i686 REQNAME=Info2 ENVIRONMENT=BATCH HOME=/home/efg SHLVL=2 NQUEUES=1 HTTP_PROXY=http://proxykc04.stowers-institute.org:8080/ PYTHONPATH=/n/site/inst/shared/sys/lib/python TMP=/tmp/84245.1.all.q JOB_ID=84245 LOGNAME=efg PRINTER=pb020502 SIMRSVC=/n/site/inst/shared/bash/services LESSOPEN=|/usr/bin/lesspipe.sh %s BLASTMAT=/n/site/inst/Linux-i686/bioinfo/ncbi/toolbox/current/data REQUEST=Info2 NSLOTS=1 G_BROKEN_FILENAMES=1 _=/usr/bin/printenv ***** 2007/10/23 11:48:19