FGENESH 2.4 Prediction of potential genes in Mouse genomic DNA Time : Mon Mar 26 13:57:06 2007 Seq name: chr9:44549350-44637269 mm8_dna range=chr9:44549350-44637269 5'pad=5000 3'pad=5000 revComp=FALSE strand=? repeatMasking=none Length of sequence: 87920 Number of predicted genes 4 in +chain 1 in -chain 3 Number of predicted exons 42 in +chain 2 in -chain 40 Positions of predicted genes and exons: Variant 1 from 1, Score:682.996973 G Str Feature Start End Score ORF Len 1 - PolA 1061 0.93 1 - 1 CDSl 1117 - 1379 34.15 1117 - 1377 261 1 - 2 CDSi 3240 - 3428 16.09 3241 - 3426 186 1 - 3 CDSf 4357 - 4465 20.39 4358 - 4465 108 1 - TSS 5829 -5.99 2 + TSS 6430 -5.19 2 + 1 CDSf 6818 - 6927 11.56 6818 - 6925 108 2 + 2 CDSl 7568 - 7754 -1.71 7569 - 7754 186 2 + PolA 8087 0.93 3 - PolA 8986 -1.88 3 - 1 CDSl 9548 - 9823 29.46 9548 - 9823 276 3 - 2 CDSi 10710 - 10839 17.45 10710 - 10838 129 3 - 3 CDSi 11361 - 11444 4.82 11363 - 11443 81 3 - 4 CDSi 12282 - 12340 3.99 12284 - 12340 57 3 - 5 CDSi 12563 - 12726 9.12 12563 - 12724 162 3 - 6 CDSi 14633 - 14707 12.60 14634 - 14705 72 3 - 7 CDSi 16221 - 16391 10.35 16222 - 16389 168 3 - 8 CDSi 18241 - 18305 6.54 18242 - 18304 63 3 - 9 CDSi 19352 - 19432 4.16 19354 - 19431 78 3 - 10 CDSi 19929 - 24165 185.96 19931 - 24163 4233 3 - 11 CDSi 24333 - 24515 5.72 24334 - 24513 180 3 - 12 CDSi 24874 - 25034 9.86 24875 - 25033 159 3 - 13 CDSi 25971 - 26049 5.36 25973 - 26047 75 3 - 14 CDSi 26167 - 26284 -1.81 26168 - 26284 117 3 - 15 CDSi 27036 - 27194 12.18 27036 - 27194 159 3 - 16 CDSi 28468 - 28605 12.08 28468 - 28605 138 3 - 17 CDSi 30430 - 30584 13.12 30430 - 30582 153 3 - 18 CDSi 30724 - 30917 6.39 30725 - 30916 192 3 - 19 CDSi 31696 - 31769 6.51 31698 - 31769 72 3 - 20 CDSi 32870 - 33043 6.86 32870 - 33043 174 3 - 21 CDSi 34507 - 34691 17.74 34507 - 34689 183 3 - 22 CDSi 35553 - 35666 17.97 35554 - 35664 111 3 - 23 CDSi 37448 - 37568 6.23 37449 - 37568 120 3 - 24 CDSi 37790 - 37885 7.76 37790 - 37885 96 3 - 25 CDSi 42617 - 42730 10.59 42617 - 42730 114 3 - 26 CDSi 43209 - 43340 9.74 43209 - 43340 132 3 - 27 CDSi 43956 - 44029 1.88 43956 - 44027 72 3 - 28 CDSi 44179 - 44562 32.34 44180 - 44560 381 3 - 29 CDSi 45004 - 45068 -1.05 45005 - 45067 63 3 - 30 CDSi 47035 - 47269 6.66 47037 - 47267 231 3 - 31 CDSi 48499 - 48676 12.47 48500 - 48676 177 3 - 32 CDSi 49050 - 51700 108.65 49050 - 51698 2649 3 - 33 CDSi 54583 - 54652 4.78 54584 - 54652 69 3 - 34 CDSi 73416 - 73484 0.57 73416 - 73484 69 3 - 35 CDSf 82495 - 82920 48.87 82495 - 82920 426 3 - TSS 83577 -11.79 4 - PolA 84123 0.93 4 - 1 CDSl 84365 - 84532 6.32 84365 - 84532 168 4 - 2 CDSf 87324 - 87386 4.49 87324 - 87386 63 Predicted protein(s): >FGENESH: 1 3 exon (s) 1117 - 4465 186 aa, chain - MGTPNDQAVLQAIFNPDTPFGDVVGLDLEEAEEGDEDGVFPQAQLEHSKALELQGVRAAE AGDLHTALEKFGQAISLLPDRASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAAR QSFVQSGLLARFQGRDDDARRDFEKAARLGSPFARRQLVLLNPYAALCNRMLADMMGQLR APSNGR >FGENESH: 2 2 exon (s) 6818 - 7754 98 aa, chain + MLNFGNGLKAELKEEFLVSVVDSEWEGKANQLEEEERRRDLLDREWSYCASGSTICPERA GGGQWVLCGYKDLVGREGKEVMDEADVMANVKLQLLGC >FGENESH: 3 35 exon (s) 9548 - 82920 3896 aa, chain - MAHSCRWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPQAGGGGPGAPPSPPAV AAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAI GTNLRRFRAVFGESGGGGGSGENYSYFGAGEMDQWLQALTTPAGDDEQFLGFGSDEEVRV RSPTRSPSVKASPRKPRGRPRSGSDRNPAILSDPSVFSPLNKSETKSADKIKKKDSKSIE KKRGRPPTFPGVKIKITHGKDIAELTQGSKEDSLKKVKRTPSAMFQQATKIKKLRAGKLS PLKSKFKTGKLQIGRKGVQIVRRRGRPPSTERIKTPSGLLINSELEKPQKVRKDKEGTPP LTKEDKTVVRQSPRRIKPVRIIPSCKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKV KTQVKNIRQFIMPVVSAISSRIIKTPRRFIEDEDYDPPMKIARLESTPNSRFSATSCGSS EKSSAASQHSSQMSSDSSRSSSPSIDTTSDSQASEEIQALPEERSNTPEVHTPLPISQSP ENESNDRRSRRYSMSERSFGSRATKKLPTLQSAPQQQTSSSPPPPLLTPPPPLQPASGIS DHTPWLMPPTIPLASPFLPASAAPMQGKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAK EGLIRKPIFDNFRPPPLTPEDVGFASGFSASGTAASARLFSPLHSGTRFDIHKRSPILRA PRFTPSEAHSRIFESVTLPSNRTSSGASSSGVSNRKRKRKVFSPIRSEPRSPSHSMRTRS GRLSTSELSPLTPPSSVSSSLSIPVSPLAASALNPTFTFPSHSLTQSGESTEKNQRARKQ TSALAEPFSSNSPALFPWFTPGSQTEKGRKKDTAPEELSKDRDADKSVEKDKSRERDRER EKENKRESRKEKRKKGSDIQSSSALYPVGRVSKEKVAGEDVGTSSSAKKATGRKKSSSLD SGADVAPVTLGDTTAVKAKILIKKGRGNLEKNNLDLGPAAPSLEKERTPCLSAPSSSTVK HSTSSIGSMLAQADKLPMTDKRVASLLKKAKAQLCKIEKSKSLKQTDQPKAQGQESDSSE TSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSVAGSE DAEPLAPPIKPIKPVTRNKAPQEPPVKKGRRSRRCGQCPGCQVPEDCGICTNCLDKPKFG GRNIKKQCCKMRKCQNLQWMPSKASLQKQTKAVKKKEKKSKTTEKKESKESTAVKSPLEP AQKAAPPPREEPAPKKSSSEPPPRKPVEEKSEEGGAPAPAPAPEPKQVSAPASRKSSKQV SQPAAVVPPQPPSTAPQKKEAPKAVPSEPKKKQPPPPEPGPEQSKQKKVAPRPSIPVKQK PKDKEKPPPVSKQENAGTLNILNPLSNGISSKQKIPADGVHRIRVDFKEDCEAENVWEMG GLGILTSVPITPRVVCFLCASSGHVEQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWIC TKCVRCKSCGSTTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQ CGKCDRWVHSKCESLSDEMYEILSNLPESVAYTCVNCTERHPAEWRLALEKELQASLKQV LTALLNSRTTSHLLRYRQAAKPPDLNPETEESIPSRSSPEGPDPPVLTEVSKQDEQQPLD LEGVKKRMDQGSYVSVQMERVFPWFSVKKSRFWEPNKVSNNSGMLPNAVLPPSLDHNYAQ WQEREESSHTEQPPLMKKIIPAPKPKGPGEPDSPTPLHPPTPPILKNHSTANFNYISLGS QGTDRSREDSPELNPPPGIDDNRQCALCLMYGDDSANDAGRLLYIGQNEWTHVNCALWSA EVFEDDDGSLKNVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLD DKKVYCQRHRDLIKGEVVPENGFEVFRRVFVDFEGISLRRKFLNGLEPENIHMMIGSMTI DCLGILNDLSDCEDKLFPIGYQCSRVYWSTTDARKRCVYTCKIMECRPPVVEPDINSTVE HDDNRTIAHSPSSFIDASCKDSQSTAAILSPPSPDRPHSQTSGSCYYHVISKVPRIRTPS YSPTQRSPGCRPLPSAGSPTPTTHEIVTVGDPLLSSGLRSIGSRRHSTSSLSPLRSKLRI MSPVRTGSAYSRSSVSSVPSLGTATDPEASAKASDRGGLLSSSANLGHSAPPSSSSQRTV GGSKTSHLDGSSPSEVKRCSASDLVPKGSLVKGEKNRTSSSKSTDGSAHSTAYPGIPKLT PQVHNATPGELNISKIGSFAEPSTVPFSSKDTVSYPQLHLRGQRSDRDQHMDPSQSVKPS PNEDGEIKTLKLPGMGHRPSILHEHIGSSSRDRRQKGKKSSKETCKEKHSSKSYLEPGQV TTGEEGNLKPEFADEVLTPGFLGQRPCNNVSSEKIGDKVLPLSGVPKGQSTQVEGSSKEL QAPRKCSVKVTPLKMEGENQSKNTQKESGPGSPAHIESVCPAEPVSASRSPGAGPGVQPS PNNTLSQDPQSNNYQNLPEQDRNLMIPDGPKPQEDGSFKRRYPRRSARARSNMFFGLTPL YGVRSYGEEDIPFYSNSTGKKRGKRSAEGQVDGADDLSTSDEDDLYYYNFTRTVISSGGE ERLASHNLFREEEQCDLPKISQLDGVDDGTESDTSVTATSRKSSQIPKRNGKENGTENLK IDRPEDAGEKEHVIKSAVGHKNEPKLDNCHSVSRVKAQGQDSLEAQLSSLESSRRVHTST PSDKNLLDTYNAELLKSDSDNNNSDDCGNILPSDIMDFVLKNTPSMQALGESPESSSSEL LTLGEGLGLDSNREKDIGLFEVFSQQLPATEPVDSSVSSSISAEEQFELPLELPSDLSVL TTRSPTVPSQNPSRLAVISDSGEKRVTITEKSVASSEGDPALLSPGVDPAPEGHMTPDHF IQGHMDADHISSPPCGSVEQGHGNSQDLTRNSGTPGLQVPVSPTVPVQNQKYVPSSTDSP GPSQISNAAVQTTPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSPVSSTPSV METNTSVLGPMGSGLTLTTGLNPSLPPSPSLFPPASKGLLSVPHHQHLHSFPAAAQSSFP PNISSPPSGLLIGVQPPPDPQLLGSEANQRTDLTTTVATPSSGLKKRPISRLHTRKNKKL APSSAPSNIAPSDVVSNMTLINFTPSQLSNHPSLLDLGSLNPSSHRTVPNIIKRSKSGIM YFEQAPLLPPQSVGGTAATAAGSSTISQDTSHLTSGPVSALASGSSVLNVVSMQTTAAPT SSTSVPGHVTLANQRLLGTPDIGSISHLLIKASHQSLGIQDQPVALPPSSGMFPQLGTSQ TPSAAAMTAASSICVLPSSQTAGMTAASPPGEAEEHYKLQRGNQLLAGKTGTLTSQRDRD PDSAPGTQPSNFTQTAEAPNGVRLEQNKTLPSAKPASSASPGSSPSSGQQSGSSSVPGPT KPKPKAKRIQLPLDKGSGKKHKVSHLRTSSEAHIPHRDTDPAPQPSVTRTPRANREQQDA AGVEQPSQKECGQPAGPVAALPEVQATQNPANEQENAEPKAMEEEESGFSSPLMLWLQQE QKRKESITERKPKKGLVFEISSDDGFQICAESIEDAWKSLTDKVQEARSNARLKQLSFAG VNGLRMLGILHDAVVFLIEQLAGAKHCRNYKFRFHKPEEANEPPLNPHGSARAEPPEYNP NDEEEEEVQLKSARRATSMDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGE MVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNC YSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN >FGENESH: 4 2 exon (s) 84365 - 87386 76 aa, chain - MVTHTYNISIQQRQEDCLKFEAQTSLRRKDVDFSAPGGRGPLEACSTPSSGLELVATCLT MNHPVVPKSATRGGPG