| trexhgt |
trexhgt speciestree genetrees
trexhgt --man | --help | --version | --verbose
Options are specified on the command line. Their case is ignored, and they may be abbreviated to uniqueness (i.e. --h instead of --help).
Automate submission and results retrieval to form http://www.trex.uqam.ca/index.php?action=hgt&project=trex, for determination of Horizontal Gene Transfer.
The contents of speciestree will provide the value for the 'species tree' and must be formatted suitably.
The contents of genetrees is taken as one or more 'gene tree' - any line containing a single integer will be taken to start a new genetree. Each of which must be formatted suitably for submission to the form.
The form will be submitted once for each genetree.
The results of each submission are concatenated on standard output.
Using file rem_0708inf_upd.dis as a common speciestree, submit all the genetrees in files matching 'POG8.dis' in the current directory
trexhgt --man $Revision: 0.01$
Malcolm Cook (mec@stowers-institute.org)
perl
Modules: File::Slurp; WWW::Mechanize; HTML::Strip;
Email the author for sources.
| trexhgt |