PUBLICATIONS > Current-1996

 

2010

Zeitlinger, J., Stark, A. (2010)
Developmental gene regulation in the era of genomics.
Dev Biol, 339(2), 230-239.

2008

Hendrix, D., Hong, J.W., Zeitlinger, J., Rokhsar, D.S., Levine, M. (2008)
Promoter elements associated with RNA Pol II stalling in the Drosophila embryo.
Proc Natl Acad Sci, 105(22), 7762-7767.

 

2007

Zeitlinger, J., Stark, A., Kellis, M., Hong, J.W., Nechaev, S., Adelman, K., Levine, M., Young, R.A. (2007)

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.

Nat Genet., 39(12), 1512-6.
[WEBSITe]

Muse, G.W., Gilchrist, D.A., Nechaev, S., Shah, R., Parker, J.S., Grissom, S.F., Zeitlinger, J., Adelman, K. (2007)
RNA polymerase is poised for activation across the genome.
Nat Genet., 39,1507-11.

Zeitlinger, J., Zinzen, R.P., Stark, A., Kellis, M., Zhang, H., Young, R.A., Levine, M. (2007)

Whole-genome ChIP-chip analysis of Dorsal, Twist and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

Genes Dev., 21, 385-90.
[WEBSITE]

 

2006

Qi, Y., Rolfe, A., MacIsaac, K.D., Gerber, G.K., Pokholok, D., Zeitlinger, J., Danford, T., Dowell, R.D., Fraenkel, E., Jaakkola, T.S., Young, R.A., Gifford, D.K. (2006)

High-resolution computational models of genome binding events.

Nat Biotechnol., 24, 963-70.

Zeitlinger, J.*, Pokholok, D.K.*, Hannett, N.M., Reynolds, D.B., Young, R.A. (2006)

Activated signal transduction kinases frequently occupy target genes.

Science, 313, 533-6. (*Equal contribution)
[WEBSITE]

Boyer, L.A., Plath, K., Zeitlinger, J., Brambrink, T., Medeiros, L.A., Lee, T.I., Levine, S.S., Wernig, M., Tajonar, A., Ray, M.K., Bell, G.W., Otte, A.P., Vidal, M., Gifford, D.K., Young, R.A., Jaenisch, R. (2006)

Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Nature, 441, 349-53.
[WEBSITE]

 

2005

Pokholok, D.K., Harbison, C.T., Levine, S., Cole, M., Hannett, N.H., Lee, T.I., Walker, K., Lewitter, F., Rolfe, P.A., Herbolsheimer, E., Bell, G.W., Zeitlinger, J., Gifford, D.K. and Young, R.A. (2005)

Genome-wide map of nucleosome acetylation and methylation in yeast.

Cell, 122, 517-27.
[WEBSITE]

 

2004

Harbison, C.T., Gordon, D.B., Lee, T.I., Rinaldi, N.J., Macisaac, K.D., Danford, T.W., Hannett, N.M., Tagne, J.-B., Reynolds, D.B., Yoo, J., Jennings, E.G., Zeitlinger, J., Pokholok, D.K., Kellis, M., Rolfe, A., Takusagawa, K.T., Lander, E.S., Gifford, D.K., Fraenkel, E. and Young, R.A. (2004)

Transcriptional regulatory code of a eukaryotic genome.

Nature, 431, 99-104
[WEBSITE]

 

2003

Zeitlinger, J., Simon, I., Harbison, C.T., Hannett, N.M., Volkert, T.L., Fink, G.F. and Young, R.A. (2003)

Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

Cell, 113, 395-404.
[WEBSITE]

 

2002

Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., Zeitlinger, J., Jennings, E.G., Murray, H.L., Gordon, D.B., Ren, B., Wyrick, J.J., Tagne, J.B., Volkert, T.L., Fraenkel, E., Gifford, D.K. and Young, R.A. (2002)

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Science, 298, 799-804.
[WEBSITE]

 

2001

Simon, I., Barnett, J., Hannett, N., Harbison, C.T., Rinaldi, N.J., Volkert, T.L., Wyrick, J.J., Zeitlinger, J., Gifford, D.K., Jaakkola, T.S. and Young, R.A. (2001)

Serial regulation of transcriptional regulators in the yeast cell cycle.

Cell, 106, 697-708.
[WEBSITE]

 

2000

Ren, B., Robert, F., Wyrick, J.J., Aparicio, O., Jennings, E.G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T.L., Wilson, C.J., Bell, S.P. and Young, R.A. (2000)

Genome-wide location and function of DNA binding proteins.

Science, 290, 2306-2309.
[WEBSITE]

 

1999

Zeitlinger, J. and Bohmann, D. (1999)

Thorax closure in Drosophila: Involvement of Fos and the JNK pathway.

Development, 126, 3947-3956.

 

1997

Zeitlinger, J., Kockel, L., Peverali, F.A., Jackson, D.B., Mlodzik, M. and Bohmann, D. (1997)

Defective dorsal closure and loss of epidermal decapentaplegic expression in Drosophila fos mutants.

Embo J., 16, 7393-7401.

Kockel, L., Zeitlinger, J., Staszewski, L.M., Mlodzik, M. and Bohmann, D. (1997) 

Jun in Drosophila development: Redundant and nonredundant functions and regulation by two MAPK signal transduction pathways.

Genes Dev., 11, 1748-1758.

 

1996

Costaridis, P., Horton, C., Zeitlinger, J., Holder, N. and Maden, M. (1996) 

Endogenous retinoids in the zebrafish embryo and adult.

Dev Dyn., 205, 41-51.