PUBLICATIONS > Current-1996
2010
Zeitlinger, J., Stark, A. (2010)
Developmental gene regulation in the era of genomics.
Dev Biol, 339(2), 230-239.
2008
Hendrix, D., Hong, J.W., Zeitlinger, J., Rokhsar, D.S., Levine, M. (2008)
Promoter elements associated with RNA Pol II stalling in the Drosophila embryo.
Proc Natl Acad Sci, 105(22), 7762-7767.
2007
Zeitlinger, J., Stark, A., Kellis, M., Hong, J.W., Nechaev, S., Adelman, K., Levine, M., Young, R.A. (2007)
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.
Nat Genet., 39(12), 1512-6.
[WEBSITe]
Muse, G.W., Gilchrist, D.A., Nechaev, S., Shah, R., Parker, J.S., Grissom, S.F., Zeitlinger, J., Adelman, K. (2007)
RNA polymerase is poised for activation across the genome.
Nat Genet., 39,1507-11.
Zeitlinger, J., Zinzen, R.P., Stark, A., Kellis, M., Zhang, H., Young, R.A., Levine, M. (2007)
Whole-genome ChIP-chip analysis of Dorsal, Twist and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
Genes Dev., 21, 385-90.
[WEBSITE]
2006
Qi, Y., Rolfe, A., MacIsaac, K.D., Gerber, G.K., Pokholok, D., Zeitlinger, J., Danford, T., Dowell, R.D., Fraenkel, E., Jaakkola, T.S., Young, R.A., Gifford, D.K. (2006)
High-resolution computational models of genome binding events.
Nat Biotechnol., 24, 963-70.
Zeitlinger, J.*, Pokholok, D.K.*, Hannett, N.M., Reynolds, D.B., Young, R.A. (2006)
Activated signal transduction kinases frequently occupy target genes.
Science, 313, 533-6. (*Equal contribution)
[WEBSITE]
Boyer, L.A., Plath, K., Zeitlinger, J., Brambrink, T., Medeiros, L.A., Lee, T.I., Levine, S.S., Wernig, M., Tajonar, A., Ray, M.K., Bell, G.W., Otte, A.P., Vidal, M., Gifford, D.K., Young, R.A., Jaenisch, R. (2006)
Polycomb complexes repress developmental regulators in murine embryonic stem cells.
Nature, 441, 349-53.
[WEBSITE]
2005
Pokholok, D.K., Harbison, C.T., Levine, S., Cole, M., Hannett, N.H., Lee, T.I., Walker, K., Lewitter, F., Rolfe, P.A., Herbolsheimer, E., Bell, G.W., Zeitlinger, J., Gifford, D.K. and Young, R.A. (2005)
Genome-wide map of nucleosome acetylation and methylation in yeast.
Cell, 122, 517-27.
[WEBSITE]
2004
Harbison, C.T., Gordon, D.B., Lee, T.I., Rinaldi, N.J., Macisaac, K.D., Danford, T.W., Hannett, N.M., Tagne, J.-B., Reynolds, D.B., Yoo, J., Jennings, E.G., Zeitlinger, J., Pokholok, D.K., Kellis, M., Rolfe, A., Takusagawa, K.T., Lander, E.S., Gifford, D.K., Fraenkel, E. and Young, R.A. (2004)
Transcriptional regulatory code of a eukaryotic genome.
Nature, 431, 99-104
[WEBSITE]
2003
Zeitlinger, J., Simon, I., Harbison, C.T., Hannett, N.M., Volkert, T.L., Fink, G.F. and Young, R.A. (2003)
Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.
Cell, 113, 395-404.
[WEBSITE]
2002
Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., Zeitlinger, J., Jennings, E.G., Murray, H.L., Gordon, D.B., Ren, B., Wyrick, J.J., Tagne, J.B., Volkert, T.L., Fraenkel, E., Gifford, D.K. and Young, R.A. (2002)
Transcriptional regulatory networks in Saccharomyces cerevisiae.
Science, 298, 799-804.
[WEBSITE]
2001
Simon, I., Barnett, J., Hannett, N., Harbison, C.T., Rinaldi, N.J., Volkert, T.L., Wyrick, J.J., Zeitlinger, J., Gifford, D.K., Jaakkola, T.S. and Young, R.A. (2001)
Serial regulation of transcriptional regulators in the yeast cell cycle.
Cell, 106, 697-708.
[WEBSITE]
2000
Ren, B., Robert, F., Wyrick, J.J., Aparicio, O., Jennings, E.G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T.L., Wilson, C.J., Bell, S.P. and Young, R.A. (2000)
Genome-wide location and function of DNA binding proteins.
Science, 290, 2306-2309.
[WEBSITE]
1999
Zeitlinger, J. and Bohmann, D. (1999)
Thorax closure in Drosophila: Involvement of Fos and the JNK pathway.
Development, 126, 3947-3956.
1997
Zeitlinger, J., Kockel, L., Peverali, F.A., Jackson, D.B., Mlodzik, M. and Bohmann, D. (1997)
Defective dorsal closure and loss of epidermal decapentaplegic expression in Drosophila fos mutants.
Embo J., 16, 7393-7401.
Kockel, L., Zeitlinger, J., Staszewski, L.M., Mlodzik, M. and Bohmann, D. (1997)
Jun in Drosophila development: Redundant and nonredundant functions and regulation by two MAPK signal transduction pathways.
Genes Dev., 11, 1748-1758.
1996
Costaridis, P., Horton, C., Zeitlinger, J., Holder, N. and Maden, M. (1996)
Endogenous retinoids in the zebrafish embryo and adult.
Dev Dyn., 205, 41-51.