PUBLICATIONS > Current-1996

2008

Hendrix, D., Hong, J. W., Zeitlinger, J., Rokhsar, D. S., Levine, M. (2008)
Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
PNAS 105(22):7762-7767.


2007

Zeitlinger, J., Stark, A., Kellis, M., Hong, J.-W., Nechaev, S., Adelman, K., Levine, M., Young, R.A. (2007)

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.

Nature Genetics 39(12):1512-6.
[WEBSITE]

Zeitlinger, J., Zinzen, R.P., Stark, A., Kellis, M., Zhang, H., Young, R.A., Levine, M. (2007)

Whole-genome ChIP-chip analysis of Dorsal, Twist and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

Genes Dev. 21:385-90.
[WEBSITE]

 

2006

Qi, Y., Rolfe, A., MacIsaac, K.D., Gerber, G.K., Pokholok, D., Zeitlinger, J., Danford, T., Dowell, R.D., Fraenkel, E., Jaakkola, T.S., Young, R.A., Gifford, D.K. (2006)

High-resolution computational models of genome binding events.

Nat Biotechnol. 24:963-70.

Pokholok, D.K., Zeitlinger, J., Hannett, N.M., Reynolds, D.B., Young, R.A. (2006)

Activated signal transduction kinases frequently occupy target genes.

Science 313:533-6. (Equal contribution)
[WEBSITE]

Boyer, L.A., Plath, K., Zeitlinger, J., Brambrink, T., Medeiros, L.A., Lee, T.I., Levine, S.S., Wernig, M., Tajonar, A., Ray, M.K., Bell, G.W., Otte, A.P., Vidal, M., Gifford, D.K., Young, R.A., Jaenisch, R. (2006)

Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Nature 441:349-53.
[WEBSITE]

 

2005

Pokholok, D.K., Harbison, C.T., Levine, S., Cole, M., Hannett, N.H., Lee, T.I., Walker, K., Lewitter, F., Rolfe, P.A., Herbolsheimer, E., Bell, G.W., Zeitlinger, J., Gifford, D.K. and Young, R.A. (2005)

Genome-wide map of nucleosome acetylation and methylation in yeast.

Cell 122:517-27.
[WEBSITE]

 

2004

Harbison, C.T., Gordon, D.B., Lee, T.I., Rinaldi, N.J., Macisaac, K.D., Danford, T.W., Hannett, N.M., Tagne, J.-B., Reynolds, D.B., Yoo, J., Jennings, E.G., Zeitlinger, J., Pokholok, D.K., Kellis, M., Rolfe, A., Takusagawa, K.T., Lander, E.S., Gifford, D.K., Fraenkel, E. and Young, R.A. (2004)

Transcriptional regulatory code of a eukaryotic genome.

Nature 431:99-104
[WEBSITE]

 

2003

Zeitlinger, J., Simon, I., Harbison, C.T., Hannett, N.M., Volkert, T.L., Fink, G.F. and Young, R.A. (2003)

Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

Cell 113:395-404.
[WEBSITE]

 

2002

Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., Zeitlinger, J., Jennings, E.G., Murray, H.L., Gordon, D.B., Ren, B., Wyrick, J.J., Tagne, J.B., Volkert, T.L., Fraenkel, E., Gifford, D.K. and Young, R.A. (2002)

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Science 298:799-804.
[WEBSITE]

 

2001

Simon, I., Barnett, J., Hannett, N., Harbison, C.T., Rinaldi, N.J., Volkert, T.L., Wyrick, J.J., Zeitlinger, J., Gifford, D.K., Jaakkola, T.S. and Young, R.A. (2001)

Serial regulation of transcriptional regulators in the yeast cell cycle.

Cell 106:697-708.
[WEBSITE]

 

2000

Ren, B., Robert, F., Wyrick, J.J., Aparicio, O., Jennings, E.G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T.L., Wilson, C.J., Bell, S.P. and Young, R.A. (2000)

Genome-wide location and function of DNA binding proteins.

Science 290:2306-2309.
[WEBSITE]

 

1999

Zeitlinger, J. and Bohmann, D. (1999)

Thorax closure in Drosophila: Involvement of Fos and the JNK pathway.

Development 126:3947-3956.

 

1997

Zeitlinger, J., Kockel, L., Peverali, F.A., Jackson, D.B., Mlodzik, M. and Bohmann, D. (1997)

Defective dorsal closure and loss of epidermal decapentaplegic expression in Drosophila fos mutants.

Embo J. 16 7393-7401.

Kockel, L., Zeitlinger, J., Staszewski, L.M., Mlodzik, M. and Bohmann, D. (1997) 

Jun in Drosophila development: Redundant and nonredundant functions and regulation by two MAPK signal transduction pathways.

Genes Dev. 11:1748-1758.

 

1996

Costaridis, P., Horton, C., Zeitlinger, J., Holder, N. and Maden, M. (1996) 

Endogenous retinoids in the zebrafish embryo and adult.

Dev Dyn. 205:41-51.